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Whole-body muscle segmentation in the browser
MuscleMap is a browser-based tool for automatic segmentation of 99 muscles from whole-body MRI using a MONAI 2D UNet model.
All computation runs locally in your browser using ONNX Runtime Web. No data is uploaded to any server.
MuscleMap runs entirely in your web browser using WebAssembly and ONNX Runtime. All processing occurs locally on your machine.
MuscleMap uses ONNX Runtime Web to run deep learning models directly in the browser via WebAssembly. Your NIfTI or DICOM files are read into browser memory, processed locally, and results are displayed without any network transfer.
MuscleMap does not use analytics, tracking, cookies, or any external services. The only network requests are loading the application itself and downloading model files (which are cached locally).
McKay MJ, Weber KA 2nd, Wesselink EO, Smith ZA, Abbott R, Anderson DB, Ashton-James CE, Atyeo J, Beach AJ, Burns J, Clarke S, Collins NJ, Coppieters MW, Cornwall J, Crawford RJ, De Martino E, Dunn AG, Eyles JP, Feng HJ, Fortin M, Franettovich Smith MM, Galloway G, Gandomkar Z, Glastras S, Henderson LA, Hides JA, Hiller CE, Hilmer SN, Hoggarth MA, Kim B, Lal N, LaPorta L, Magnussen JS, Maloney S, March L, Nackley AG, O'Leary SP, Peolsson A, Perraton Z, Pool-Goudzwaard AL, Schnitzler M, Seitz AL, Semciw AI, Sheard PW, Smith AC, Snodgrass SJ, Sullivan J, Tran V, Valentin S, Walton DM, Wishart LR, Elliott JM. MuscleMap: An Open-Source, Community-Supported Consortium for Whole-Body Quantitative MRI of Muscle. J Imaging. 2024;10(11):262.
https://doi.org/10.3390/jimaging10110262MuscleMap uses the following methods and tools:
MONAI Consortium. (2020). MONAI: Medical Open Network for AI.
https://monai.ioMicrosoft. ONNX Runtime: cross-platform, high performance ML inferencing and training accelerator.
https://onnxruntime.aiNiiVue Contributors. NiiVue: a WebGL2 medical image viewer.
https://github.com/niivue/niivue